Advanced course in environmental conservation
A Table of Contents
[ Introduction | Spatiotemporal pattern and scale | Disturbance | Community diversity | Multivariate analysis | Temporal pattern: Community change and succession ]
[ References | Examination (レポート Report) ]
Expected background: Knowing "fundamental ecology" and/or related subjects
Content: Lecture held in 2009
Room# C202 (10:30-12:00)
Detailed memo
October 7 2010
Introduction (Guidance)
What is this lecture?
Contents
Flow chart of this lecture

Classification of ecology
Life cycle (life history)
Case of Trillium (Ref. T. smallii )
MVP (minimum viable population)
Case: Trillium in fragmented forests
Metapopulation
Case: Silver-studded blue butterfly (Plejebus argus) in North Wales
Case: spatial occurrence and abundance patterns of Maculinea butterflies
October 14 2010
Ecosystem (or biosystem)
Environment
Definitions and criteria of plant community
Flora (floristic composition) - Ex. Mount Koma
Vegetation physiognomy
Strata (sg. stratum)
Larch forest in Oku-Nikko
Strata of tropical forest with reference to the conservation of mammal species
Herbaceous plant diversities vs strata
Pattern and scale
Plant community dynamics = spatial and temporal patterns
The problems on pattern and scale in ecology
Complex dynamics in ecology
Toposequence, chronosequence, and permanent plot
Toposequence
Soil moisture (or water depth) gradient
October 21 2010
Baidzharakhs (relic mounds)
Chronosequence: Case, Fire history
Scaling from large to small
Scale-dependent factor
Vegetation in gullies created by ice wedges near Kolyma River
Scale-dependent interactions
Scale-dependent interactions and community structure on cobble beaches
October 28 2010
Seasonal shifts in competition and facilitation in subalpine plant communities of the central Caucasus
Global (biome) > Regional > Habitat > Microhabitat
Biome: Precipitation and temperature
World
Plant functional types (PFT) and species attributes
Inductive method vs deductive method
Attributes for obtaining PFT: vegetative strategy, life history, phenology, and seed biology
Case: comparison of plant community structures between distinct areas
Case: landscape-scale variation in the seed banks of floodplain wetlands with contrasting hydrology in China
Japan
Climate (temperature and precipitation)
Distribution of fern species in Japan
Warmth index
Snow (dorso-ventral sturcture)
Dwarf-shaped plants: Adaptation to snow
Hokkaido
Distribution of Sasa (dwarf bamboo) in Hokkaido
November 4 2010
Vegetation map
Soil type map - andosol, lithosol, and regosol
Habitat
Dorso-ventral sturcture of plant community on mountians
Case: Hokkaido
Microhabitat
Case 1. Pumice Plains on MSH: rill, near-rock
Case 2. Hummock-hollow complex (Bulte-schlenke comlex)
Application of postfire peat accumulation and microtopography in boreal bogs
Case 3. Tree establishment on Mount Usu: rill, ground surface texture
Disturbance
Natural disturbance and human disturbance
Scale, frequency and intensity
Natural disturbance
Floodplain
Case study: Vegetation zonation in Sorachi River
Disturbance-maintained landscape
November 11 2010
Intermediate (-disturbance) hypothesis
Relationships between grazing pressure and species richness showing the intermediate grazing optimization hypothesis, compensatory growth model and overgrazing model
Effect of pocket gophers on plant community dynamics
Plant species diversity in response to disturbance magnitude in a grassland remnants
Soil erosion
Types of soil erosion
Water erosion, subsurface erosion and wind erosion
Sheet erosion, rill erosion, gully erosion, and streambank collapse and removal
Cases: Alpine area, volcano
Problems on the measurement of underground organs
(Mini)rhizotron
Estimation of root lifespan
Forest fire
Soil profile (acidic brown forest soil)
The role of duff on seedling establishment
November 18 2010
Field trip to understand real plants
see the flora list for HUSTEP
November 25 2010
Seeder and sprouter
Fallen-log regeneration
Human disturbance
Examples, Military forces (US Air Forces), Refugee, and coal slag heap
Biological invasion
Alien species
Invasive species - biological invasion
Invasion patterns of larch (Larix kaempferi) on Mount Koma
Seed source vs environmental factors (elevation, aspect, and slope)
Morphological plasticity
Interactions
Distribution and dispersion
Random, contagious, and regular distribution patterns
Age and dispersion pattern
Analysis methods on spatial pattern
Dispersion pattern analysis
Spatial autocorrelation
December 2 2010
Competition: intera-specific and inter-specific competition
Competition experiment design
Aboveground competition vs belowground competition
Competition for light causes plant biodiversity loss after eutrophication
Indices of plant-plant competition
On indices of plant-plant competition and their pitfalls
Regional effects on competition-productivity relationship: a set of field experiments in two distant regions
Determinants on ecosystem structure with reference to "scale"
Environmental gradients, biotic interactions, and disturbance
Island Biogeography
Principles: distance from mother land and island size
Mother land
Relationship between island area and number of species
Minimum area for the establishment of species
Relationship between island area and extinction rate
How human makes islands (forest cutting, etc.)
Owl can not establish on small islands
Relationship between distance from mother land and immigration rate
Graphical presentation of island biogeography
Measuring immigration and extinction rates
December 9 2010
Ecotone and corridor
Corridor in landscape
Corridor supports the movements of animals and plants
Corridor supports population growth rate
Conservation areas determined by corridors and island biogeography
Applications of island biogeography to nature conservation
Edge
Effects of edge on inside and outside of island
Buffer zone
MVP again. How do we decide nature reservation area?
Restoration ecology
Management methods for degraded ecosystems
Land degradation
Terminology used in the analysis of ecosystem stability
Landscape ecology
Landscape unit: structure, function, and change
Satoyama (village forest)
Interaction between ecosystems: terrestrial-oceanic link created by food chain
Community diversity
α-diversity, β-diversity, and γ-diversity
α-diversity = within-habitat diversity
β-diversity = between-community diversity
γ-diversity = landscape diversity
α-diversity (and γ-diversity)
Type 0: Using number of species = Species richness
Type 1: Using number of species and total individuals
Type 2: Using relative dominance
Relationship between animal species richness and plant structural diversity
Species richness
Fischer's α-diversity index - Representative T1
Case: Species richness in Kinabalu
How to measure α-diversity
Shannon-Wiener diversity index (H') - representative T2
Bit
Diversity and evenness
Selection of parameter for diversity
Density vs biomass
Niche
Resource patitioning hypothesis
Niche breadth and overlap
Scale dependent effects of land use on plant species richness
December 16 2010
'Correlation' vs 'causal relation'
β-diversity (between-habitat diversity)
Types of similarity index
Binary data and quantitative data
Jaccard, Sorensen, Simpson, Eucledean distance, etc.
Similarity and dissimilarity
Similarity matrix
Diamond graph
Case study: bee fauna on Mount Usu
Multivariate analysis
Main purposes of multivariate analysis
Classification and ordination
Clsutering or cluster analysis
Cluster analysis
Divisive strategy vs agglomerative strategy
Nearest neighbor method (single-linkage method)
Agglomerative strategy
From 'single linkage method' to 'Average linkage method'
Single linkage method
Average linkage method
Dendrogram
Divisive strategy
Principle
TWINSPAN (two-way indicator analysis)
Other clustering methods
Ordination: Indirect and direct ordination
Indirect ordination
Polar ordination (PO)
Weighted average
Correspondence analysis/Reciprocal average (CA/RA)
Hump: arch and horseshoe
Detrended correspondence analysis (DCA)
Principal component analysis (PCA)
Eigenvalue and eigenvector
Horseshoe
Application of PCA on fern development
December 22 2010 (13:00, C202) (Closed)
Canonical correspondence analysis
Principles
Application of CCA on the relationship between seedbank and standing vegetation
Temporal change and succession
Classification of successional sere: Primary succession (Xeric succession, Mesic succession), Secondary succession
Concept of succession
Life history characteristics, proposed by Grime (1979)
Three models on succession
Facilitation
Tolerance
Inhibition
Successional paces
Species turnover
Application of percentage similarity and community coefficient
Wetland succession (mesic succession)
Definition of wetland - very diverse
Wetland, moor, mire, bog, fen, swamp, and marsh
Mycorrhizal types: ectomycorrhziae and endomycorrhizae
Interactions between seed plants and AM fungi
Xeric succession: Chronosequence approach
Characteristics of vegetation recovery on Mount Usu
Equilibrium theory vs non-equilibrium theory
Facilitation
Lupine patches on Mount St. Helens
Shrub (Salix reinii) patches on Mount Koma
Application of facilitation to restoration
References
How to write the paper for evaluation (2010)
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